IL_1BZ3_001

3D structure

PDB id

1BZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS,3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

ACU*AAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1BZ3_001 not in the Motif Atlas

Geometric match to IL_8P9A_406

Geometric discrepancy: 0.1519

The information below is about IL_8P9A_406

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

1BZ3|1|A|A|31
1BZ3|1|A|C|32
1BZ3|1|A|U|33
*
1BZ3|1|A|A|37
1BZ3|1|A|A|38
1BZ3|1|A|U|39

Current chains

Chain A

TRNA

Nearby chains