IL_1C04_003
3D structure
- PDB id
- 1C04 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1C04_003 not in the Motif Atlas
- Geometric match to IL_7A0S_007
- Geometric discrepancy: 0.1759
- The information below is about IL_7A0S_007
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
1C04|1|F|C|6
1C04|1|F|U|7
1C04|1|F|C|8
1C04|1|F|A|9
1C04|1|F|G|10
1C04|1|F|U|11
1C04|1|F|A|12
1C04|1|F|C|13
*
1C04|1|F|G|18
1C04|1|F|G|19
1C04|1|F|A|20
1C04|1|F|A|21
1C04|1|F|C|22
1C04|1|F|C|23
1C04|1|F|G|24
Current chains
- Chain F
- 23S RRNA FRAGMENT
Nearby chains
- Chain B
- RIBOSOMAL PROTEIN L6
- Chain D
- RIBOSOMAL PROTEIN L14
Coloring options: