IL_1C4L_001

3D structure

PDB id

1C4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

SOLUTION STRUCTURE OF AN RNA DUPLEX INCLUDING A C-U BASE-PAIR

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1C4L_001 not in the Motif Atlas

Geometric match to IL_4WF9_020

Geometric discrepancy: 0.1512

The information below is about IL_4WF9_020

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

1C4L|1|A|C|4
1C4L|1|A|U|5
1C4L|1|A|C|6
*
1C4L|1|B|G|13
1C4L|1|B|C|14
1C4L|1|B|G|15

Current chains

Chain A

RNA (5'-R(*CP*GP*AP*CP*UP*CP*AP*GP*G)-3')

Chain B

RNA (5'-R(*CP*CP*UP*GP*CP*GP*UP*CP*G)-3')

Nearby chains