IL_1DDY_009

3D structure

PDB id

1DDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

MOLECULAR RECOGNITION BY THE VITAMIN B12 RNA APTAMER

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCAUAACC*GUGCG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1DDY|1|G|C|611
1DDY|1|G|G|612
1DDY|1|G|C|613
1DDY|1|G|A|614
1DDY|1|G|U|615
1DDY|1|G|A|616
1DDY|1|G|A|617
1DDY|1|G|C|618
1DDY|1|G|C|619
*
1DDY|1|G|G|626
1DDY|1|G|U|627
1DDY|1|G|G|628
1DDY|1|G|C|629
1DDY|1|G|G|630

Current chains

Chain G

VITAMIN B12 BINDING RNA

Nearby chains

Chain C

VITAMIN B12 BINDING RNA