1DDY Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1DDY_001 | 1/A/19:26 | No text annotation | geometric HL_1ET4_001 NA | |
| HL_1DDY_002 | 1/C/219:226 | No text annotation | geometric HL_1ET4_001 NA | |
| HL_1DDY_003 | 1/E/419:426 | No text annotation | geometric HL_1ET4_001 NA | |
| HL_1DDY_004 | 1/G/619:626 | No text annotation | geometric HL_1ET4_001 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1DDY_001 | 1/A/11:18, 1/A/28:30 | Vitamin B12 Aptamer | geometric IL_1ET4_001 NA | |
| IL_1DDY_002 | 1/A/18:19, 1/A/26:28 | Multiple bulged bases | geometric IL_5WTK_001 IL_71421.4 | |
| IL_1DDY_003 | 1/C/211:218, 1/C/228:230 | Vitamin B12 Aptamer | geometric IL_1ET4_001 NA | |
| IL_1DDY_004 | 1/C/218:219, 1/C/226:228 | Major groove intercalation | geometric IL_1ET4_002 NA | |
| IL_1DDY_005 | 1/E/411:418, 1/E/428:430 | Vitamin B12 Aptamer | geometric IL_1ET4_001 NA | |
| IL_1DDY_006 | 1/E/418:419, 1/E/426:428 | Major groove intercalation | geometric IL_1ET4_002 NA | |
| IL_1DDY_007 | 1/G/611:618, 1/G/628:630 | Vitamin B12 Aptamer | geometric IL_1ET4_001 NA | |
| IL_1DDY_009 | 1/G/611:619, 1/G/626:630 | No text annotation | ||
| IL_1DDY_008 | 1/G/618:619, 1/G/626:628 | Major groove intercalation | geometric IL_1ET4_002 NA |
Problematic loops
No problematic loops
Valid loops
No loops found
Problematic loops
No problematic loops
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