IL_1DQH_001

3D structure

PDB id

1DQH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF HELIX II OF THE X. LAEVIS SOMATIC 5S RRNA WITH A CYTOSINE BULGE IN TWO CONFORMATIONS

Experimental method

X-RAY DIFFRACTION

Resolution

1.7 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

1DQH|1|B|C|16

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

35

Unit IDs

1DQH|1|A|C|3
1DQH|1|A|A|4
*
1DQH|1|B|U|15
1DQH|1|B|C|16
1DQH|1|B|G|17

Current chains

Chain A

RNA (5'-R(*GP*CP*CP*AP*CP*CP*CP*UP*G)-3')

Chain B

RNA (5'-R(*CP*AP*GP*GP*GP*UP*CP*GP*GP*C)-3')

Nearby chains