IL_1DRZ_001

3D structure

PDB id

1DRZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

U1A SPLICEOSOMAL PROTEIN/HEPATITIS DELTA VIRUS GENOMIC RIBOZYME COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CAUGGUCCCAG*CG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1DRZ_001 not in the Motif Atlas

Geometric match to IL_4PR6_001

Geometric discrepancy: 0.0641

The information below is about IL_4PR6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93657.1

Basepair signature

cWW-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1DRZ|1|B|C|107
1DRZ|1|B|A|108
1DRZ|1|B|U|109
1DRZ|1|B|G|110
1DRZ|1|B|G|111
1DRZ|1|B|U|112
1DRZ|1|B|C|113
1DRZ|1|B|C|114
1DRZ|1|B|C|115
1DRZ|1|B|A|116
1DRZ|1|B|G|117
*
1DRZ|1|B|C|130
1DRZ|1|B|G|131

Current chains

Chain B

RNA (HEPATITIS DELTA VIRUS GENOMIC RIBOZYME)

Nearby chains