IL_1DUQ_007

3D structure

PDB id

1DUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE REV BINDING ELEMENT OF HIV-1

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GGGC*GGUAC

Length

9 nucleotides

Bulged bases

1DUQ|1|H|U|425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62585.1

Basepair signature

cWW-cHW-cWH-cWW

Number of instances in this motif group

5

Unit IDs

1DUQ|1|G|G|404
1DUQ|1|G|G|405
1DUQ|1|G|G|406
1DUQ|1|G|C|407
*
1DUQ|1|H|G|423
1DUQ|1|H|G|424
1DUQ|1|H|U|425
1DUQ|1|H|A|426
1DUQ|1|H|C|427

Current chains

Chain G

THE REV BINDING ELEMENT

Chain H

THE REV BINDING ELEMENT

Nearby chains

Chain D

THE REV BINDING ELEMENT