IL_1E7K_001
3D structure
- PDB id
- 1E7K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAUGAG*CGAG
- Length
- 11 nucleotides
- Bulged bases
- 1E7K|1|C|U|31
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- Kink-turn from U4
- Broad Annotation
- Kink-turn
- Motif group
- IL_51265.3
- Basepair signature
- cWW-tSS-tHS-tSH-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
1E7K|1|C|C|28
1E7K|1|C|A|29
1E7K|1|C|A|30
1E7K|1|C|U|31
1E7K|1|C|G|32
1E7K|1|C|A|33
1E7K|1|C|G|34
*
1E7K|1|C|C|42
1E7K|1|C|G|43
1E7K|1|C|A|44
1E7K|1|C|G|45
Current chains
- Chain C
- RNA (5'-R(*GP*CP*CP*AP*AP*UP*GP*AP*GP*GP*UP*UP*UP* AP*UP*CP*CP*GP*AP*GP*G*C(-3')
Nearby chains
- Chain A
- 15.5 KD RNA BINDING PROTEIN
- Chain B
- 15.5 KD RNA BINDING PROTEIN
Coloring options: