Motif IL_51265.3 Version IL_51265.3 of this group appears in releases 3.89 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-9 | 5-8 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1E7K_001 | 1E7K | 0.3546 | 1 | Kink-turn from U4 | C | RNA (22-mer) | C | 28 | A | 29 | A | 30 | G | 32 | A | 33 | G | 34 | * | C | 42 | G | 43 | A | 44 | G | 45 | cWW | ntsS | tSH | tHS | cWW |
| 2 | IL_2OZB_002 | 2OZB | 0.2619 | 1 | Kink-turn from U4 | C | RNA comprising the 5' Stem-Loop RNA of U4snRNA | C | 28 | A | 29 | A | 30 | G | 32 | A | 33 | G | 34 | * | C | 42 | G | 43 | A | 44 | G | 45 | cWW | tsS | tSH | tHS | cWW |
| 3 | IL_4LCK_006 | 4LCK | 0.2384 | 1 | Kink-turn from T-box riboswitch | F | T-box leader | C | 6 | G | 7 | A | 8 | G | 10 | A | 11 | G | 12 | * | C | 94 | G | 95 | A | 96 | G | 97 | cWW | ntsS | ntSH | ntHS | cWW |
| 4 | IL_3SIV_001 | 3SIV | 0.0000 | 1 | Kink-turn from U4 | C+F | U4atac snRNA | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | * | U | 47 | G | 48 | A | 49 | G | 50 | cWW | ntsS | tSH | tHS | cWW |
| 5 | IL_3SIU_002 | 3SIU | 0.0785 | 1 | Kink-turn from U4 | F | U4atac snRNA | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | * | U | 47 | G | 48 | A | 49 | G | 50 | cWW | ntsS | tSH | tHS | cWW |
| 6 | IL_3SIV_003 | 3SIV | 0.0865 | 1 | Kink-turn from U4 | F+C | U4atac snRNA | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | * | U | 47 | G | 48 | A | 49 | G | 50 | cWW | ntsS | tSH | tHS | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAUGAG*UGAG | 3 |
| CAAUGAG*CGAG | 2 |
| CGAUGAG*CGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAUGA*GA | 5 |
| GAUGA*GA | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn from U4 (5)
- Kink-turn from T-box riboswitch (1)
- Basepair signature
- cWW-tSS-tHS-tSH-cWW-L
- Heat map statistics
- Min 0.08 | Avg 0.19 | Max 0.36
Coloring options: