IL_1EBS_005

3D structure

PDB id

1EBS (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF RNA (5'-GGUGGGCGCAGCUUCGGCUGCGGUACCAC-3'), NMR, 5 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GGGC*GGUAC

Length

9 nucleotides

Bulged bases

1EBS|5|A|U|24

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1EBS_005 not in the Motif Atlas

Geometric match to IL_6DLR_005

Geometric discrepancy: 0.3607

The information below is about IL_6DLR_005

Detailed Annotation

tWW and near cWH

Broad Annotation

tWW and near cWH

Motif group

IL_45860.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

1EBS|5|A|G|4
1EBS|5|A|G|5
1EBS|5|A|G|6
1EBS|5|A|C|7
*
1EBS|5|A|G|22
1EBS|5|A|G|23
1EBS|5|A|U|24
1EBS|5|A|A|25
1EBS|5|A|C|26

Current chains

Chain A

HIV-1 REV RESPONSIVE ELEMENT RNA

Nearby chains