IL_1EHT_020

3D structure

PDB id

1EHT (explore in PDB, NAKB, or RNA 3D Hub)

Description

THEOPHYLLINE-BINDING RNA IN COMPLEX WITH THEOPHYLLINE, NMR, 10 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CAGC*GCCCUUG

Length

11 nucleotides

Bulged bases

1EHT|1|A|C|22, 1EHT|1|A|U|23, 1EHT|1|A|U|24

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1EHT_020 not in the Motif Atlas

Geometric match to IL_4EYA_008

Geometric discrepancy: 0.3432

The information below is about IL_4EYA_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_37443.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

1EHT|1|A|C|9
1EHT|1|A|A|10
1EHT|1|A|G|11
1EHT|1|A|C|12
*
1EHT|1|A|G|19
1EHT|1|A|C|20
1EHT|1|A|C|21
1EHT|1|A|C|22
1EHT|1|A|U|23
1EHT|1|A|U|24
1EHT|1|A|G|25

Current chains

Chain A

THEOPHYLLINE-BINDING RNA

Nearby chains