1EHT Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1EHT_001 | 1/A/13:18 | GNRA | geometric HL_4WF9_016 HL_34789.5 | |
| HL_1EHT_002 | 2/A/13:18 | GNRA | geometric HL_6WPI_001 HL_34789.5 | |
| HL_1EHT_003 | 3/A/13:18 | GNRA | geometric HL_5J7L_019 NA | |
| HL_1EHT_004 | 4/A/13:18 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_1EHT_005 | 5/A/13:18 | GNRA | geometric HL_5J7L_019 NA | |
| HL_1EHT_006 | 6/A/13:18 | GNRA | geometric HL_4AL5_001 HL_34789.5 | |
| HL_1EHT_007 | 7/A/13:18 | GNRA | geometric HL_5F9R_003 NA | |
| HL_1EHT_008 | 8/A/13:18 | GNRA | geometric HL_1MZP_001 HL_34789.5 | |
| HL_1EHT_009 | 9/A/13:18 | GNRA | geometric HL_5J7L_148 NA | |
| HL_1EHT_010 | 10/A/13:18 | GNRA | geometric HL_4ZT0_004 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1EHT_011 | GNRA with extra near cWW |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1EHT_001 | 1/A/4:8, 1/A/26:30 | No text annotation | geometric IL_8D28_003 IL_63519.1 | |
| IL_1EHT_002 | 1/A/9:11, 1/A/20:25 | Isolated non-canonical cWW with bulges | geometric IL_3KTW_002 NA | |
| IL_1EHT_003 | 2/A/4:8, 2/A/26:30 | No text annotation | ||
| IL_1EHT_004 | 2/A/9:11, 2/A/20:25 | No text annotation | geometric IL_5E81_401 IL_42997.6 | |
| IL_1EHT_005 | 3/A/4:8, 3/A/26:30 | No text annotation | geometric IL_8D28_003 IL_63519.1 | |
| IL_1EHT_006 | 3/A/9:11, 3/A/20:25 | No text annotation | ||
| IL_1EHT_007 | 4/A/4:8, 4/A/26:30 | No text annotation | geometric IL_8D28_003 IL_63519.1 | |
| IL_1EHT_008 | 4/A/9:11, 4/A/20:25 | Isolated non-canonical cWW with bulges | geometric IL_5ML7_010 IL_68118.5 | |
| IL_1EHT_025 | 5/A/4:8, 5/A/26:30 | No text annotation | geometric IL_8D28_003 IL_63519.1 | |
| IL_1EHT_031 | 5/A/9:11, 5/A/20:25 | No text annotation | ||
| IL_1EHT_010 | 6/A/4:8, 6/A/26:30 | No text annotation | geometric IL_8D28_003 IL_63519.1 | |
| IL_1EHT_032 | 6/A/9:11, 6/A/20:25 | No text annotation | geometric IL_8D28_004 IL_02111.1 | |
| IL_1EHT_012 | 7/A/4:8, 7/A/26:30 | No text annotation | geometric IL_8D28_003 IL_63519.1 | |
| IL_1EHT_033 | 7/A/9:11, 7/A/20:25 | No text annotation | ||
| IL_1EHT_014 | 8/A/4:8, 8/A/26:30 | No text annotation | geometric IL_8D28_003 IL_63519.1 | |
| IL_1EHT_015 | 8/A/9:11, 8/A/20:25 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_1EHT_016 | 9/A/4:8, 9/A/26:30 | No text annotation | geometric IL_8DK7_001 IL_63519.1 | |
| IL_1EHT_034 | 9/A/9:11, 9/A/20:25 | No text annotation | ||
| IL_1EHT_030 | 10/A/4:8, 10/A/26:30 | No text annotation | geometric IL_8D28_003 IL_63519.1 | |
| IL_1EHT_019 | 10/A/9:11, 10/A/20:25 | Isolated non-canonical cWW with bulges | geometric IL_5ML7_010 IL_68118.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1EHT_020 | Tandem non-canonical cWW pairs | ||
| IL_1EHT_021 | No text annotation | ||
| IL_1EHT_022 | No text annotation | ||
| IL_1EHT_023 | No text annotation | ||
| IL_1EHT_024 | No text annotation | ||
| IL_1EHT_009 | No text annotation | ||
| IL_1EHT_026 | No text annotation | ||
| IL_1EHT_027 | No text annotation | ||
| IL_1EHT_011 | No text annotation | ||
| IL_1EHT_028 | No text annotation | ||
| IL_1EHT_013 | Tandem non-canonical cWW pairs | ||
| IL_1EHT_029 | No text annotation | ||
| IL_1EHT_017 | Tandem non-canonical cWW pairs | ||
| IL_1EHT_018 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
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