IL_1EI2_016

3D structure

PDB id

1EI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR RECOGNITION OF THE RNA MAJOR GROOVE IN THE TAU EXON 10 SPLICING REGULATORY ELEMENT BY AMINOGLYCOSIDE ANTIBIOTICS

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GUG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUG,CAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1EI2_016 not in the Motif Atlas

Geometric match to IL_7A0S_031

Geometric discrepancy: 0.2708

The information below is about IL_7A0S_031

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

1EI2|14|A|G|7
1EI2|14|A|U|8
1EI2|14|A|G|9
*
1EI2|14|A|C|18
1EI2|14|A|A|19
1EI2|14|A|C|20

Current chains

Chain A

TAU EXON 10 SRE RNA

Nearby chains