IL_1EKZ_004

3D structure

PDB id

1EKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR STRUCTURE OF THE COMPLEX BETWEEN THE THIRD DSRBD FROM DROSOPHILA STAUFEN AND A RNA HAIRPIN

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUG,CAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1EKZ_004 not in the Motif Atlas

Geometric match to IL_3GM7_004

Geometric discrepancy: 0.1891

The information below is about IL_3GM7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

1EKZ|22|B|C|7
1EKZ|22|B|U|8
1EKZ|22|B|G|9
*
1EKZ|22|B|C|22
1EKZ|22|B|A|23
1EKZ|22|B|G|24

Current chains

Chain B

STAUFEN DOUBLE-STRANDED RNA BINDING DOMAIN

Nearby chains

Chain A

MATERNAL EFFECT PROTEIN (STAUFEN)