IL_1F1T_004

3D structure

PDB id

1F1T (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE MALACHITE GREEN APTAMER COMPLEXED WITH TETRAMETHYL-ROSAMINE

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

C(5BU)G*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1F1T_004 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.1186

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

1F1T|1|A|C|10
1F1T|1|A|5BU|11
1F1T|1|A|G|12
*
1F1T|1|A|C|21
1F1T|1|A|A|22
1F1T|1|A|G|23

Current chains

Chain A

MALACHITE GREEN APTAMER RNA

Nearby chains