IL_1FFK_012

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAGC*GACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FFK_012 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.2134

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

1FFK|1|0|C|287
1FFK|1|0|A|288
1FFK|1|0|G|289
1FFK|1|0|C|290
*
1FFK|1|0|G|362
1FFK|1|0|A|363
1FFK|1|0|C|364
1FFK|1|0|G|365

Current chains

Chain 0

23S RRNA

Nearby chains

Chain I

RIBOSOMAL PROTEIN L15E