RNA 3D Hub //

Motif IL_15225.2 Version IL_15225.2 of this group appears in releases 4.1 to 4.1

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_8P9A_4208P9A0.32001Tandem non-canonical cWW pairssR SSU rRNAC950A951A952G953*C874G875G877G878cWWcWWcWWcWW
2 IL_8CRE_4348CRE0.30001Tandem non-canonical cWW pairsCM SSU rRNAC935A936A937G938*C859G860G862G863cWWcWWcWWcWW
3 IL_8GLP_2388GLP0.27291Tandem non-canonical cWW pairs (H)S2 SSU rRNAC1007A1008A1009G1010*C931G932G934G935cWWcWWcWWcWW
4 IL_8GLP_1668GLP0.23890L5 LSU rRNAG4743A4744G4745C4746*G4954A4955A4956C4957cWWcWwcWWcWW
5 IL_8GLP_2448GLP0.21930S2 SSU rRNAG1131C1132A1133G1134*C1098G1099A1100U1101cWWncBWcWWcWW
6 IL_8CRE_4408CRE0.18980Tandem non-canonical cWW pairsCM SSU rRNAG1059C1060A1061C1062*G1026G1027A1028U1029cWWncBWcWWcWW
7 IL_8P9A_4268P9A0.21140Tandem non-canonical cWW pairssR SSU rRNAG1074C1075A1076C1077*G1041G1042A1043U1044cWWncBWcWWcWW
8 IL_8B0X_1038B0X0.00000Tandem non-canonical cWW pairs (H)a LSU rRNAG1040A1041A1042G1043*C1116G1117G1118C1119cWWcWWcWWcWW
9 IL_8P9A_3278P9A0.15700Tandem non-canonical cWW pairsAR LSU rRNAU2735A2736C2737A2738*U2718U2719G2720A2721cWWcWWcWW
10 IL_8OI5_1018OI50.15810Tandem non-canonical cWW pairs (H)1 LSU rRNAU2707A2708C2709A2710*U2690U2691G2692A2693cWWcWWcWW
11 IL_7R9G_0027R9G0.21070Tandem non-canonical cWW pairsBRNA (18-mer)C5G6G7G8*C5||||2_555G6||||2_555G7||||2_555G8||||2_555ncWWncWW
12 IL_6GYV_0026GYV0.32920ALariat-capping ribozymeG31G32G33U34*A15G16A17C18cWWcWWcWW
13 IL_8GLP_2398GLP0.34610Tandem non-canonical cWW pairs (H)S2 SSU rRNAA981G982A983C984*G942U943A944U945cWWcWWcWW
14 IL_8P9A_4218P9A0.35570Tandem non-canonical cWW pairssR SSU rRNAA924G925A926C927*G885U886A887U888cWWcWWcWW
15 IL_8CRE_4358CRE0.35420Tandem non-canonical cWW pairsCM SSU rRNAA909G910A911C912*G870U871A872U873cWWcWWcWW
16 IL_3CJZ_0013CJZ0.35080Tandem non-canonical cWW pairsA+BRNA (13-mer)G5M2G6A7C8*G18M2G19A20C21cWWcWWcWWcWW
17 IL_5LQO_0025LQO0.24230Tandem non-canonical cWW pairsA+BRNA (10-mer)G4G5A6C7*G4G5A6C7cWWcWWcWWcWW
18 IL_5LQT_0025LQT0.20370Tandem non-canonical cWW pairsA+BRNA (10-mer)G4G56MZ6C7*G4G56MZ6C7cWWcWWcWWcWW
19 IL_8GLP_2378GLP0.29810S2 SSU rRNAG1010A1011A1012U1013*G928G929C930C931cWWcWWncWW
20 IL_8CRE_4338CRE0.31380Tandem non-canonical cWW pairsCM SSU rRNAG938G939A940C941*G856G857U858C859cWWcWWcWW
21 IL_8P9A_4198P9A0.31060Tandem non-canonical cWW pairssR SSU rRNAG871G872U873C874*G953G954A955C956cWWcWWcWW
22 IL_8GLP_3108GLP0.33790Tandem non-canonical cWW pairs (H)L5 LSU rRNAPSU4312A4313C4314A4315*U4295PSU4296G4297A4298cWWcWWcWWcWW
23 IL_6JDV_0026JDV0.32680Tandem non-canonical cWW pairsBCRISPR RNA direct repeat elementA63C64C65G66*C35C36U37U38cWWcWWcWW
24 IL_4K27_0014K270.36090Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC4C5U6G7*C49C50U51G52cWWcWWcWWcWW
25 IL_8FER_0018FER0.49060Tandem non-canonical cWW pairsAAA+BBBRNA 16mer with two continuous s(2)UG7SUR8SUR9C10*G7SUR8SUR9C10cWWcWwcWwcWW
26 IL_5EW4_0025EW40.41810Tandem non-canonical cWW pairsA+BRNA (22-mer)C14C15C16G17*C8C9C10G11cWWncWBncWBcWW
27 IL_7VYX_0027VYX0.40280Tandem non-canonical cWW pairsCsgRNAC13U14U15C16*G50G51U52G53ncWWncWwncWWacWW
28 IL_3WBM_0033WBM0.33300Tandem non-canonical cWW pairsY+XRNA (25-MER)A10C11C12C13*G14A15C16U17cWWncWBcWWcWW
29 IL_3WBM_0023WBM0.31860Tandem non-canonical cWW pairsX+YRNA (25-MER)A10C11C12C13*G14A15C16U17cWWncWBncWWcWW
30 IL_1D4R_0011D4R0.31880Tandem non-canonical cWW pairsA+B29-MER OF MODIFIED SRP RNA HELIX 6G4A5C6C7*G22A23C24C25cWWcWWcWWacWW
31 IL_1JID_0021JID0.31690Tandem non-canonical cWW pairsBHELIX 6 OF HUMAN SRP RNAG138A139C140C141*G156A157C158C159cWWcWWcWWcWW
32 IL_1D4R_0031D4R0.30150Tandem non-canonical cWW pairsA+B29-MER OF MODIFIED SRP RNA HELIX 6G22A23C24C25*G4A5C6C7cWWcWWcWWcWW
33 IL_1MFQ_0041MFQ0.27800Tandem non-canonical cWW pairsA SRP RNAG138A139C140C141*G156A157C158C159cWWncWWncWWcWW
34 IL_9AXU_0949AXU0.20640Tandem non-canonical cWW pairs (H)2 LSU rRNAU2830A2831C2832A2833*U2813U2814G2815A2816cWWcWWcWWcWW
35 IL_4EYA_0104EYA0.37630Tandem non-canonical cWW pairsm+nRNA (12-mer)C6U7U8G9*C6U7U8G9cWWncwWncwWncWW
36 IL_8GLP_2778GLP0.41451S2 SSU rRNAA1822A1823A1824G1826*C1708G1709C1710U1711cWWcWWacWW
37 IL_8B0X_0328B0X0.36171Tandem non-canonical cWW pairs (H)A SSU rRNAU740G741G742A743*U662A663G664G666cWWcWwcWWcWW
38 IL_4LFB_0294LFB0.35951Tandem non-canonical cWW pairsA SSU rRNAU740G741G742U743*G662A663G664G666cWWcWwcWWcWW
39 IL_1KUQ_0031KUQ0.50871Tandem non-canonical cWW pairsB16S RIBOSOMAL RNA FRAGMENTG26A27||AG28||AG30*U39G40G41U42cWWncWWcwWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GACC*GACC4
CAAG*CGGGG3
UACA*UUGA3
AGAC*GUAU3
GCAC*GGAU2
ACCC*GACU2
GAGC*GAAC1
GCAG*CGAU1
GAAG*CGGC1
CGGG*CGGG1
GGGU*AGAC1
GAC*GAC1
GGAC*GGAC1
GGC*GGC1
GAAU*GGCC1
GGAC*GGUC1
GGUC*GGAC1
(PSU)ACA*U(PSU)GA1
ACCG*CCUU1
CCUG*CCUG1
G(SUR)(SUR)C*G(SUR)(SUR)C1
CCCG*CCCG1
CUUC*GGUG1
CUUG*CUUG1
AAAAG*CGCU1
UGGA*UAGAG1
UGGU*GAGAG1
GAGAG*UGGU1
Non-Watson-Crick part of the motif
SequenceCounts
AC*AC4
AA*GGG3
CA*GA3
AC*UG3
GA*UA3
CC*AC2
GG*AGA2
AG*AA1
AA*GG1
GG*GG1
GG*GA1
(M2G)A*(M2G)A1
GA*GA1
G(6MZ)*G(6MZ)1
AA*GC1
GA*GU1
GU*GA1
AC*(PSU)G1
CC*CU1
CU*CU1
(SUR)(SUR)*(SUR)(SUR)1
CC*CC1
UU*GU1
UU*UU1
AAA*GC1
AGA*GG1

Release history

Release4.1
Date2025-09-10
StatusUpdated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Tandem non-canonical cWW pairs (27)
  • Tandem non-canonical cWW pairs (H) (7)
  • (5)
    • Basepair signature
    cWW-cWW-cWW-cWW
    Heat map statistics
    Min 0.05 | Avg 0.37 | Max 0.78
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