IL_1FFK_013

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FFK_013 not in the Motif Atlas

Geometric match to IL_4V9F_012

Geometric discrepancy: 0.0523

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1FFK|1|0|C|290
1FFK|1|0|C|291
1FFK|1|0|G|292
1FFK|1|0|A|293
1FFK|1|0|C|294
1FFK|1|0|C|295
1FFK|1|0|G|296
*
1FFK|1|0|C|355
1FFK|1|0|C|356
1FFK|1|0|A|357
1FFK|1|0|G|358
1FFK|1|0|U|359
1FFK|1|0|A|360
1FFK|1|0|C|361
1FFK|1|0|G|362

Current chains

Chain 0

23S RRNA

Nearby chains