IL_1FFK_020

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGACCG*CCAGUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FFK_020 not in the Motif Atlas

Geometric match to IL_4V9F_019

Geometric discrepancy: 0.0585

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

1FFK|1|0|U|567
1FFK|1|0|G|568
1FFK|1|0|A|569
1FFK|1|0|C|570
1FFK|1|0|C|571
1FFK|1|0|G|572
*
1FFK|1|0|C|585
1FFK|1|0|C|586
1FFK|1|0|A|587
1FFK|1|0|G|588
1FFK|1|0|U|589
1FFK|1|0|A|590
1FFK|1|0|A|591

Current chains

Chain 0

23S RRNA

Nearby chains

Chain T

RIBOSOMAL PROTEIN L30