IL_1FFK_040
3D structure
- PDB id
- 1FFK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- UUAAGUG*CUCAAA
- Length
- 13 nucleotides
- Bulged bases
- 1FFK|1|0|C|1245, 1FFK|1|0|A|1247
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1FFK_040 not in the Motif Atlas
- Homologous match to IL_4V9F_040
- Geometric discrepancy: 0.1422
- The information below is about IL_4V9F_040
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
1FFK|1|0|U|1115
1FFK|1|0|U|1116
1FFK|1|0|A|1117
1FFK|1|0|A|1118
1FFK|1|0|G|1119
1FFK|1|0|U|1120
1FFK|1|0|G|1121
*
1FFK|1|0|C|1243
1FFK|1|0|U|1244
1FFK|1|0|C|1245
1FFK|1|0|A|1246
1FFK|1|0|A|1247
1FFK|1|0|A|1248
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain 1
- RIBOSOMAL PROTEIN L6
- Chain G
- RIBOSOMAL PROTEIN L13
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