IL_1FFK_042

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CCUAGACAG*CCGAG

Length

14 nucleotides

Bulged bases

1FFK|1|0|A|1150

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FFK_042 not in the Motif Atlas

Homologous match to IL_4V9F_042

Geometric discrepancy: 0.0654

The information below is about IL_4V9F_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.3

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

1FFK|1|0|C|1147
1FFK|1|0|C|1148
1FFK|1|0|U|1149
1FFK|1|0|A|1150
1FFK|1|0|G|1151
1FFK|1|0|A|1152
1FFK|1|0|C|1153
1FFK|1|0|A|1154
1FFK|1|0|G|1155
*
1FFK|1|0|C|1212
1FFK|1|0|C|1213
1FFK|1|0|G|1214
1FFK|1|0|A|1215
1FFK|1|0|G|1216

Current chains

Chain 0

23S RRNA

Nearby chains