IL_1FFK_048

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FFK_048 not in the Motif Atlas

Homologous match to IL_4V9F_050

Geometric discrepancy: 0.0386

The information below is about IL_4V9F_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

1FFK|1|0|G|1416
1FFK|1|0|G|1417
1FFK|1|0|U|1418
1FFK|1|0|U|1419
*
1FFK|1|0|A|1678
1FFK|1|0|C|1679

Current chains

Chain 0

23S RRNA

Nearby chains

Chain P

RIBOSOMAL PROTEIN L23

Chain X

RIBOSOMAL PROTEIN L37E

Chain Y

RIBOSOMAL PROTEIN L39E