IL_1FFK_049

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCACU*AGC

Length

8 nucleotides

Bulged bases

1FFK|1|0|G|1438

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FFK_049 not in the Motif Atlas

Homologous match to IL_4V9F_051

Geometric discrepancy: 0.0553

The information below is about IL_4V9F_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

1FFK|1|0|G|1425
1FFK|1|0|C|1426
1FFK|1|0|A|1427
1FFK|1|0|C|1428
1FFK|1|0|U|1429
*
1FFK|1|0|A|1437
1FFK|1|0|G|1438
1FFK|1|0|C|1439

Current chains

Chain 0

23S RRNA

Nearby chains

Chain M

RIBOSOMAL PROTEIN L19

Chain O

RIBOSOMAL PROTEIN L22