Motif IL_63596.12 Version IL_63596.12 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-3 | 1-7 | 2-4 | 2-6 | 3-7 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6XJQ_001 | 6XJQ | 0.1642 | 1 | C-loop | A | Self-alkylating ribozyme (58-MER) | G | 5 | C | 6 | U | 7 | C | 8 | C | 9 | * | G | 52 | C | 54 | ncSH | cWW | cSH | tWH | ncWS | cWW | |
| 2 | IL_7A0S_095 | 7A0S | 0.1141 | 1 | C-loop | X | LSU rRNA | C | 2659 | C | 2660 | G | 2661 | C | 2662 | U | 2663 | * | A | 2705 | G | 2707 | cWW | ncSH | tWH | cWS | cWW | ||
| 3 | IL_4WF9_101 | 4WF9 | 0.0882 | 1 | C-loop | X | LSU rRNA | C | 2707 | C | 2708 | U | 2709 | C | 2710 | U | 2711 | * | A | 2752 | G | 2754 | cWW | ncSH | tWH | ntHS | cWS | cWW | |
| 4 | IL_8B0X_162 | 8B0X | 0.0000 | 1 | C-loop (H) | a | LSU rRNA | U | 2684 | C | 2685 | A | 2686 | C | 2687 | U | 2688 | * | A | 2729 | A | 2731 | cWW | cSH | tWH | cWS | cWW | ||
| 5 | IL_9E6Q_095 | 9E6Q | 0.1125 | 1 | C-loop (H) | 1 | LSU rRNA | C | 2795 | C | 2796 | U | 2797 | C | 2798 | U | 2799 | * | A | 2838 | G | 2840 | cWW | cSH | tWH | tHS | cWS | cWW | |
| 6 | IL_5B2P_003 | 5B2P | 0.1719 | 1 | C-loop | B | Guide RNA | C | 76 | C | 77 | U | 78 | C | 79 | U | 80 | * | A | 88 | G | 90 | cWW | cSH | tWH | tHS | cWS | cWW | |
| 7 | IL_9DFE_103 | 9DFE | 0.1048 | 1 | C-loop | 1A | LSU rRNA | C | 2680 | C | 2681 | U | 2682 | C | 2683 | U | 2684 | * | A | 2725 | G | 2727 | cWW | cSH | tWH | tHS | cWS | cWW | |
| 8 | IL_4V9F_051 | 4V9F | 0.1686 | 1 | C-loop | 0 | LSU rRNA | G | 1425 | C | 1426 | A | 1427 | C | 1428 | U | 1429 | * | A | 1437 | C | 1439 | cWW | cSH | tWH | cWS | cWW | ||
| 9 | IL_4V9F_093 | 4V9F | 0.1408 | 1 | C-loop | 0 | LSU rRNA | C | 2717 | C | 2718 | A | 2719 | C | 2720 | U | 2721 | * | A | 2761 | G | 2763 | cWW | cSH | tWH | cWS | cWW | ||
| 10 | IL_4JRC_003 | 4JRC | 0.1687 | 1 | C-loop | B | Distal Stem I region of the glyQS T box leader RNA | C | 29 | C | 30 | U | 31 | C | 32 | U | 33 | * | A | 73 | G | 75 | cWW | cSH | tWH | tHS | cWS | cWW | |
| 11 | IL_4MGN_001 | 4MGN | 0.1517 | 1 | C-loop | A | glyQS T box riboswitch | C | 29 | C | 30 | U | 31 | C | 32 | U | 33 | * | A | 73 | G | 75 | cWW | ncSH | ntWH | ntHS | cWS | cWW | |
| 12 | IL_1KOG_007 | 1KOG | 0.1581 | 1 | C-loop | O | Threonyl-tRNA synthetase mRNA | C | 96 | C | 97 | A | 98 | C | 99 | U | 100 | * | A | 74 | G | 76 | ncSH | cWW | cSH | tWH | cWS | cWW | |
| 13 | IL_8CRE_445 | 8CRE | 0.2112 | 2 | C-loop | CM | SSU rRNA | U | 1604 | C | 1605 | C | 1606 | C | 1607 | U | 1608 | * | A | 1142 | A | 1145 | cSH | cWW | ncSH | tWH | cWS | cWW | |
| 14 | IL_8GLP_251 | 8GLP | 0.2013 | 2 | C-loop (H) | S2 | SSU rRNA | U | 1681 | C | 1682 | C | 1683 | C | 1684 | U | 1685 | * | A | 1214 | A | 1217 | ncSH | cWW | ncSH | tWH | cWS | cWW | |
| 15 | IL_8P9A_431 | 8P9A | 0.1940 | 2 | C-loop | sR | SSU rRNA | U | 1617 | C | 1618 | C | 1619 | C | 1620 | U | 1621 | * | A | 1157 | A | 1160 | cWW | tWH | cWS | cWW | |||
| 16 | IL_6JDV_004 | 6JDV | 0.2126 | 1 | C-loop | B | CRISPR RNA direct repeat element | G | 105 | C | 106 | U | 107 | C | 108 | U | 109 | * | A | 138 | C | 140 | ncSH | cWW | tWH | cWS | cWW | ||
| 17 | IL_8HNT_002 | 8HNT | 0.1443 | 1 | C-loop | B | sgRNA | G | 87 | C | 88 | U | 89 | C | 90 | U | 91 | * | A | 120 | C | 122 | ncSH | cWW | ncSH | tWH | cWS | cWW | |
| 18 | IL_9DFE_050 | 9DFE | 0.2401 | 1 | C-loop | 1A | LSU rRNA | G | 1319 | C | 1320 | A | 1321 | A | 1322 | U | 1323 | * | A | 1331 | C | 1333 | cWW | tWH | cWS | cWW | |||
| 19 | IL_8B0X_110 | 8B0X | 0.2302 | 1 | C-loop (H) | a | LSU rRNA | C | 1321 | C | 1322 | A | 1323 | A | 1324 | C | 1325 | * | G | 1333 | G | 1335 | cWW | tWH | cWS | cWW | |||
| 20 | IL_9E6Q_053 | 9E6Q | 0.2718 | 1 | C-loop (H) | 1 | LSU rRNA | G | 1448 | C | 1449 | A | 1450 | A | 1451 | C | 1452 | * | G | 1460 | C | 1462 | cWW | tWH | cWS | cWW | |||
| 21 | IL_8OI5_063 | 8OI5 | 0.2906 | 1 | C-loop (H) | 1 | LSU rRNA | U | 1497 | C | 1498 | A | 1499 | A | 1500 | C | 1501 | * | G | 1509 | A | 1511 | ncWW | tWH | cWS | cWW | |||
| 22 | IL_8P9A_290 | 8P9A | 0.2852 | 1 | C-loop | AR | LSU rRNA | U | 1501 | C | 1502 | A | 1503 | A | 1504 | C | 1505 | * | G | 1513 | A | 1515 | ncWW | tWH | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUCU*ACG | 4 |
| UCCCU*ACCA | 3 |
| CCUCU*AUG | 2 |
| GCUCU*AUC | 2 |
| UCAAC*GGA | 2 |
| GCUCC*GUC | 1 |
| CCGCU*AUG | 1 |
| UCACU*AAA | 1 |
| GCACU*AGC | 1 |
| CCACU*ACG | 1 |
| CCACU*AUG | 1 |
| GCAAU*AGC | 1 |
| CCAAC*GGG | 1 |
| GCAAC*GGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUC*U | 5 |
| CAA*G | 5 |
| CUC*C | 4 |
| CCC*CC | 3 |
| CGC*U | 1 |
| CAC*A | 1 |
| CAC*G | 1 |
| CAC*C | 1 |
| CAC*U | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- C-loop (16)
- C-loop (H) (6)
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Heat map statistics
- Min 0.09 | Avg 0.24 | Max 0.60
Coloring options: