IL_1FFK_052

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAGUGAAAG*CGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FFK_052 not in the Motif Atlas

Homologous match to IL_4V9F_054

Geometric discrepancy: 0.1681

The information below is about IL_4V9F_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41853.1

Basepair signature

cWW-L-tHH-L-tHS-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

1FFK|1|0|C|1521
1FFK|1|0|A|1522
1FFK|1|0|G|1523
1FFK|1|0|U|1524
1FFK|1|0|G|1525
1FFK|1|0|A|1526
1FFK|1|0|A|1527
1FFK|1|0|A|1528
1FFK|1|0|G|1529
*
1FFK|1|0|C|1662
1FFK|1|0|G|1663
1FFK|1|0|A|1664
1FFK|1|0|G|1665

Current chains

Chain 0

23S RRNA

Nearby chains