IL_1FFK_063

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGCAAAU*ACUCGUACG

Length

16 nucleotides

Bulged bases

1FFK|1|0|A|1857, 1FFK|1|0|C|1872, 1FFK|1|0|C|1876

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FFK_063 not in the Motif Atlas

Homologous match to IL_4V9F_065

Geometric discrepancy: 0.034

The information below is about IL_4V9F_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

1FFK|1|0|C|1854
1FFK|1|0|G|1855
1FFK|1|0|C|1856
1FFK|1|0|A|1857
1FFK|1|0|A|1858
1FFK|1|0|A|1859
1FFK|1|0|U|1860
*
1FFK|1|0|A|1869
1FFK|1|0|C|1870
1FFK|1|0|U|1871
1FFK|1|0|C|1872
1FFK|1|0|G|1873
1FFK|1|0|U|1874
1FFK|1|0|A|1875
1FFK|1|0|C|1876
1FFK|1|0|G|1877

Current chains

Chain 0

23S RRNA

Nearby chains

Chain A

RIBOSOMAL PROTEIN L2

Chain W

RIBOSOMAL PROTEIN L37AE