IL_1FFK_069

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

1FFK|1|0|G|1979, 1FFK|1|0|U|1985, 1FFK|1|0|U|2004

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FFK_069 not in the Motif Atlas

Geometric match to IL_4V9F_071

Geometric discrepancy: 0.0369

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1FFK|1|0|C|1975
1FFK|1|0|G|1976
1FFK|1|0|U|1977
1FFK|1|0|A|1978
1FFK|1|0|G|1979
1FFK|1|0|U|1980
1FFK|1|0|A|1981
1FFK|1|0|C|1982
1FFK|1|0|C|1983
1FFK|1|0|U|1984
1FFK|1|0|U|1985
1FFK|1|0|G|1986
*
1FFK|1|0|C|2002
1FFK|1|0|U|2003
1FFK|1|0|U|2004
1FFK|1|0|G|2005

Current chains

Chain 0

23S RRNA

Nearby chains