IL_1FFK_088

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

AUAGUAC*GGAACU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FFK_088 not in the Motif Atlas

Homologous match to IL_4V9F_092

Geometric discrepancy: 0.2409

The information below is about IL_4V9F_092

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

1FFK|1|0|A|2689
1FFK|1|0|U|2690
1FFK|1|0|A|2691
1FFK|1|0|G|2692
1FFK|1|0|U|2693
1FFK|1|0|A|2694
1FFK|1|0|C|2695
*
1FFK|1|0|G|2700
1FFK|1|0|G|2701
1FFK|1|0|A|2702
1FFK|1|0|A|2703
1FFK|1|0|C|2704
1FFK|1|0|U|2705

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 1

RIBOSOMAL PROTEIN L6