IL_1FFZ_008

3D structure

PDB id

1FFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAG*CGAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FFZ_008 not in the Motif Atlas

Homologous match to IL_4V9F_080

Geometric discrepancy: 0.0785

The information below is about IL_4V9F_080

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_14250.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

10

Unit IDs

1FFZ|1|A|C|2331
1FFZ|1|A|A|2332
1FFZ|1|A|G|2333
*
1FFZ|1|A|C|2351
1FFZ|1|A|G|2352
1FFZ|1|A|A|2353
1FFZ|1|A|A|2354
1FFZ|1|A|G|2355

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains