IL_4V9F_080

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAG*CGAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

4V9F|1|0|C|2331
4V9F|1|0|A|2332
4V9F|1|0|G|2333
*
4V9F|1|0|C|2351
4V9F|1|0|G|2352
4V9F|1|0|A|2353
4V9F|1|0|A|2354
4V9F|1|0|G|2355

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain D

50S ribosomal protein L5P

Chain N

50S ribosomal protein L18P

Chain Q

50S ribosomal protein L21e