IL_1FFZ_010

3D structure

PDB id

1FFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAG*CUAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FFZ_010 not in the Motif Atlas

Geometric match to IL_5TBW_091

Geometric discrepancy: 0.2943

The information below is about IL_5TBW_091

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1FFZ|1|A|G|2489
1FFZ|1|A|A|2490
1FFZ|1|A|G|2491
*
1FFZ|1|A|C|2530
1FFZ|1|A|U|2531
1FFZ|1|A|A|2532
1FFZ|1|A|C|2533

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains