Motif IL_63450.5 Version IL_63450.5 of this group appears in releases 3.89 to 3.90

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7	1-7	2-6	3-4	3-6	4-5
1	IL_4V9F_072	4V9F	0.3975	0		0	LSU rRNA	G	2090	G	2091	G	2092	G	2093	*	U	2652	A	2653	C	2654	cWW	cWW	cSH		cWW
2	IL_6DME_003	6DME	0.3723	0		A	ppGpp Riboswitch	G	33	A	34	A	35	G	36	*	C	20	A	21	C	22	cWW	cwW	cSH		cWW
3	IL_7SZU_003	7SZU	0.3118	0		R	RNA aptamer	G	49	C	50	A	51	C	52	*	G	25	A	26	C	27	cWW	cWW	cSH		cWW
4	IL_5TBW_091	5TBW	0.0941	0	Major groove platform with extra pair	1	LSU rRNA	G	2391	C	2392	G	2393	G	2394	*	U	2986	A	2987	C	2988	cWW	cWW	cSH		cWW
5	IL_8C3A_096	8C3A	0.0000	0	Major groove platform with extra pair (H)	1	LSU rRNA	G	2369	C	2370	G	2371	G	2372	*	U	2958	A	2959	C	2960	cWW	cWW	cSH		cWW
6	IL_5TBW_087	5TBW	0.3962	1	Major groove platform with extra pair	1	LSU rRNA	G	2206	A	2207	A	2208	G	2210	*	C	2235	G	2236	C	2237	cWW				cWW
7	IL_3DD2_004	3DD2	0.5989	2		B	RNA (26-MER)	G	3	A	4	A	5	A	8	*	UFT	21	A	22	CFL	23	cWW			cSW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCGG*UAC	2
GGGG*UAC	1
GAAG*CAC	1
GCAC*GAC	1
GAAUG*CGC	1
GAA(CFL)AA*(UFT)A(CFL)	1

Non-Watson-Crick part of the motif

Sequence	Counts
CG*A	2
GG*A	1
AA*A	1
CA*A	1
AAU*G	1
AA(CFL)A*A	1

Release history

Release	3.89	3.90
Date	2024-10-09	2024-11-06
Status	Updated, 1 parent	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
Major groove platform with extra pair (2)
Major groove platform with extra pair (H) (1)
Basepair signature: cWW-cHS-cWW-cWW-cWW
Heat map statistics: Min 0.09 | Avg 0.37 | Max 0.64

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Coloring options: Nucleotide numbers

Motif IL_63450.5 Version IL_63450.5 of this group appears in releases 3.89 to 3.90 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_63450.5 Version IL_63450.5 of this group appears in releases 3.89 to 3.90

Download

Csv

Json