IL_1FFZ_021

3D structure

PDB id

1FFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCG*CAGG

Length

7 nucleotides

Bulged bases

1FFZ|1|A|A|2637

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FFZ_021 not in the Motif Atlas

Geometric match to IL_4V9F_017

Geometric discrepancy: 0.2283

The information below is about IL_4V9F_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

1FFZ|1|A|C|2625
1FFZ|1|A|C|2626
1FFZ|1|A|G|2627
*
1FFZ|1|A|C|2636
1FFZ|1|A|A|2637
1FFZ|1|A|G|2638
1FFZ|1|A|G|2639

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain B

R(P*CP*C*)-D(P*A)-R(P*(PU))