IL_1FG0_005

3D structure

PDB id

1FG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH A 13 BP MINIHELIX-PUROMYCIN COMPOUND

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

1FG0|1|A|G|2271

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FG0_005 not in the Motif Atlas

Homologous match to IL_4V9F_076

Geometric discrepancy: 0.0527

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

1FG0|1|A|C|2122
1FG0|1|A|A|2123
1FG0|1|A|G|2124
*
1FG0|1|A|C|2269
1FG0|1|A|G|2270
1FG0|1|A|G|2271
1FG0|1|A|G|2272

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains