Motif IL_87316.2 Version IL_87316.2 of this group appears in releases 4.3 to 4.3
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9DFE_010 | 9DFE | 0.2724 | 1 | 1A | LSU rRNA | C | 288 | A | 289 | G | 290 | * | U | 350 | G | 351 | G | 353 | cWW | tHS | cWW | |
| 2 | IL_9E6Q_079 | 9E6Q | 0.3316 | 1 | Isolated tHS basepair with bulges (H) | 1 | LSU rRNA | C | 2201 | A | 2202 | G | 2203 | * | C | 2347 | G | 2348 | G | 2350 | cWW | tHS | cWW |
| 3 | IL_8GLP_099 | 8GLP | 0.3343 | 1 | L5 | LSU rRNA | C | 2646 | A | 2647 | G | 2648 | * | C | 2685 | G | 2686 | G | 2688 | cWW | tHS | cWW | |
| 4 | IL_4V9F_076 | 4V9F | 0.2933 | 1 | Isolated tHS basepair with bulges | 0 | LSU rRNA | C | 2122 | A | 2123 | G | 2124 | * | C | 2269 | G | 2270 | G | 2272 | cWW | tHS | cWW |
| 5 | IL_9DFE_082 | 9DFE | 0.2340 | 1 | 1A | LSU rRNA | C | 2081 | A | 2082 | G | 2083 | * | C | 2236 | G | 2237 | G | 2239 | cWW | tHS | cWW | |
| 6 | IL_7A0S_077 | 7A0S | 0.1501 | 1 | Isolated tHS basepair with bulges | X | LSU rRNA | U | 2064 | A | 2065 | G | 2066 | * | C | 2215 | G | 2216 | G | 2218 | cWW | ntHS | cWW |
| 7 | IL_8B0X_144 | 8B0X | 0.1073 | 1 | Isolated tHS basepair with bulges (H) | a | LSU rRNA | U | 2085 | A | 2086 | G | 2087 | * | U | 2240 | G | 2241 | G | 2243 | cWW | tHS | cWW |
| 8 | IL_8GLP_133 | 8GLP | 0.0000 | 1 | L5 | LSU rRNA | U | 3927 | A | 3928 | G | 3929 | * | U | 4181 | G | 4182 | G | 4184 | cWW | tHS | cWW | |
| 9 | IL_9AXU_089 | 9AXU | 0.0658 | 1 | 2 | LSU rRNA | U | 2511 | A | 2512 | G | 2513 | * | U | 2699 | G | 2700 | G | 2702 | cWW | tHS | cWW | |
| 10 | IL_8OI5_097 | 8OI5 | 0.0862 | 1 | 1 | LSU rRNA | U | 2401 | A | 2402 | G | 2403 | * | U | 2576 | G | 2577 | G | 2579 | cWW | tHS | cWW | |
| 11 | IL_8P9A_323 | 8P9A | 0.1064 | 1 | Isolated tHS basepair with bulges (H) | AR | LSU rRNA | U | 2423 | A | 2424 | G | 2425 | * | U | 2604 | G | 2605 | G | 2607 | cWW | tHS | cWW |
| 12 | IL_4WF9_082 | 4WF9 | 0.1424 | 1 | Isolated tHS basepair with bulges | X | LSU rRNA | U | 2108 | A | 2109 | G | 2110 | * | C | 2263 | G | 2264 | G | 2266 | cWW | tHS | cWW |
| 13 | IL_9K8P_004 | 9K8P | 0.8621 | 3 | B | DNAzyme minGAA | OMG | 18||||2_655 | DG | 21||||2_655 | DG | 22||||2_655 | * | DC | 5 | DA | 6 | DC | 8 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAG*UGGG | 5 |
| CAG*CGGG | 3 |
| UAG*CGGG | 2 |
| CAG*UGGG | 1 |
| CAG*CGUG | 1 |
| (OMG)AAGG*CACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GG | 11 |
| A*GU | 1 |
| AAG*AC | 1 |
Release history
| Release | 4.3 |
|---|---|
| Date | 2025-11-05 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Isolated tHS basepair with bulges (3)
- Isolated tHS basepair with bulges (H) (3)
- Basepair signature
- cWW-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.30 | Max 1.00
Coloring options: