3D structure

PDB id
1FKA (explore in PDB, NAKB, or RNA 3D Hub)
Description
STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GUC*GCC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1FKA_052 not in the Motif Atlas
Geometric match to IL_3LA5_001
Geometric discrepancy: 0.1359
The information below is about IL_3LA5_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_86319.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
269

Unit IDs

1FKA|1|A|G|1414
1FKA|1|A|U|1415
1FKA|1|A|C|1416
*
1FKA|1|A|G|1438
1FKA|1|A|C|1439
1FKA|1|A|C|1440

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain T
30S RIBOSOMAL PROTEIN S20

Coloring options:


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