IL_1FKA_070

3D structure

PDB id

1FKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAACC*GGGUAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FKA_070 not in the Motif Atlas

Homologous match to IL_6CZR_145

Geometric discrepancy: 0.5775

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

1FKA|1|A|C|763
1FKA|1|A|A|764
1FKA|1|A|A|765
1FKA|1|A|A|766
1FKA|1|A|C|767
1FKA|1|A|C|768
*
1FKA|1|A|G|782
1FKA|1|A|G|783
1FKA|1|A|G|784
1FKA|1|A|U|785
1FKA|1|A|A|786
1FKA|1|A|G|787

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains