IL_1FKA_084

3D structure

PDB id

1FKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGC*GCU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1FKA_084 not in the Motif Atlas

Geometric match to IL_8CRE_417

Geometric discrepancy: 0.2561

The information below is about IL_8CRE_417

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1FKA|1|A|G|577
1FKA|1|A|G|578
1FKA|1|A|G|579
1FKA|1|A|C|580
*
1FKA|1|A|G|628
1FKA|1|A|C|629
1FKA|1|A|U|630

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain H

30S RIBOSOMAL PROTEIN S8

Chain Q

30S RIBOSOMAL PROTEIN S17