Motif IL_77718.1 Version IL_77718.1 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9SUM_009 | 9SUM | 0.5023 | 1 | A | LSU rRNA | U | 163 | G | 164 | U | 165 | C | 167 | * | G | 235 | U | 236 | G | 237 | cWW | cWW | ||
| 2 | IL_8CRE_406 | 8CRE | 0.4520 | 0 | CM | SSU rRNA | C | 268 | A | 269 | U | 270 | G | 271 | * | U | 281 | G | 282 | G | 283 | cWW | ncSW | ncWW | |
| 3 | IL_9H3G_172 | 9H3G | 0.4483 | 0 | h1 | SSU rRNA | C | 271 | A | 272 | U | 273 | G | 274 | * | U | 285 | G | 286 | G | 287 | cWW | cWW | ||
| 4 | IL_9PN5_157 | 9PN5 | 0.4380 | 0 | B5 | SSU rRNA | C | 270 | A | 271 | U | 272 | G | 273 | * | U | 283 | G | 284 | G | 285 | cWW | cWW | ||
| 5 | IL_9SUM_153 | 9SUM | 0.4470 | 0 | CA | SSU rRNA | C | 259 | A | 260 | U | 261 | G | 262 | * | C | 272 | G | 273 | G | 274 | cWW | ncSW | cWW | |
| 6 | IL_8GLP_208 | 8GLP | 0.4141 | 0 | S2 | SSU rRNA | C | 317 | A | 318 | C | 319 | G | 320 | * | C | 331 | G | 332 | G | 333 | cWW | ncSW | cWW | |
| 7 | IL_8CRE_417 | 8CRE | 0.3501 | 0 | CM | SSU rRNA | G | 495 | G | 496 | U | 497 | C | 498 | * | G | 485 | G | 486 | C | 487 | cWW | ncWw | ncSW | cWW |
| 8 | IL_9SUM_059 | 9SUM | 0.1685 | 0 | A | LSU rRNA | G | 1560 | A | 1561 | U | 1562 | G | 1563 | * | C | 1766 | G | 1767 | C | 1768 | cWW | cWW | cWW | |
| 9 | IL_8OI5_066 | 8OI5 | 0.0000 | 0 | 1 | LSU rRNA | G | 1614 | A | 1615 | U | 1616 | A | 1617 | * | U | 1820 | G | 1821 | C | 1822 | cWW | cSW | cWW | |
| 10 | IL_9PN5_063 | 9PN5 | 0.0768 | 0 | A1 | LSU rRNA | G | 1618 | A | 1619 | U | 1620 | A | 1621 | * | U | 1824 | G | 1825 | C | 1826 | cWW | cSW | cWW | |
| 11 | IL_5DO4_004 | 5DO4 | 0.3129 | 2 | A | RNA (25-MER) | G | 3 | A | 4 | A | 5 | A | 8 | * | UMS | 21 | A | 22 | CFZ | 23 | cWW | cSW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUG*UGG | 3 |
| GAUA*UGC | 2 |
| UGUUC*GUG | 1 |
| CAUG*CGG | 1 |
| CACG*CGG | 1 |
| GGUC*GGC | 1 |
| GAUG*CGC | 1 |
| GAA(CFZ)AA*(UMS)A(CFZ) | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*G | 7 |
| GUU*U | 1 |
| AC*G | 1 |
| GU*G | 1 |
| AA(CFZ)A*A | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (11)
- Basepair signature
- cWW-L-cSW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.39 | Max 0.67
Coloring options: