IL_1G70_004

3D structure

PDB id

1G70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF HIV-1 RRE-IIB RNA WITH RSG-1.2 PEPTIDE

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

1G70|2|A|A|68

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1G70_004 not in the Motif Atlas

Geometric match to IL_7A0S_012

Geometric discrepancy: 0.3283

The information below is about IL_7A0S_012

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

1G70|2|A|G|50
1G70|2|A|C|51
*
1G70|2|A|G|67
1G70|2|A|A|68
1G70|2|A|C|69

Current chains

Chain A

HIV-1 RRE-IIB 32 NUCLEOTIDE RNA

Nearby chains

Chain B

RSG-1.2 PEPTIDE