3D structure

PDB id
1HNW (explore in PDB, NAKB, or RNA 3D Hub)
Description
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GGAGUACG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1HNW_034 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.0626
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

1HNW|1|A|G|887
1HNW|1|A|G|888
1HNW|1|A|A|889
1HNW|1|A|G|890
1HNW|1|A|U|891
1HNW|1|A|A|892
1HNW|1|A|C|893
1HNW|1|A|G|894
*
1HNW|1|A|U|905
1HNW|1|A|G|906
1HNW|1|A|A|907
1HNW|1|A|A|908
1HNW|1|A|A|909
1HNW|1|A|C|910

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain L
30S RIBOSOMAL PROTEIN S12

Coloring options:


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