IL_1HNW_040

3D structure

PDB id

1HNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGC*GCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGC,GCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1HNW_040 not in the Motif Atlas

Geometric match to IL_2ZI0_001

Geometric discrepancy: 0.2272

The information below is about IL_2ZI0_001

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

1HNW|1|A|U|997
1HNW|1|A|G|998
1HNW|1|A|C|999
*
1HNW|1|A|G|1042
1HNW|1|A|C|1043
1HNW|1|A|A|1044

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain N

30S RIBOSOMAL PROTEIN S14