IL_1HNW_057

3D structure

PDB id

1HNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1HNW_057 not in the Motif Atlas

Geometric match to IL_4V88_411

Geometric discrepancy: 0.3525

The information below is about IL_4V88_411

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.2

Basepair signature

cWW-tHS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

1HNW|1|A|C|1407
1HNW|1|A|A|1408
1HNW|1|A|C|1409
*
1HNW|1|A|G|1491
1HNW|1|A|A|1492
1HNW|1|A|A|1493
1HNW|1|A|G|1494

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain L

30S RIBOSOMAL PROTEIN S12