IL_1HNW_062

3D structure

PDB id

1HNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

1HNW|1|A|G|1443, 1HNW|1|A|A|1446

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1HNW_062 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.1322

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34117.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

1HNW|1|A|C|1440
1HNW|1|A|G|1441
1HNW|1|A|G|1442
1HNW|1|A|G|1443
1HNW|1|A|A|1446
1HNW|1|A|G|1447
*
1HNW|1|A|C|1459
1HNW|1|A|A|1460
1HNW|1|A|G|1461

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain T

30S RIBOSOMAL PROTEIN S20