IL_1HNZ_071

3D structure

PDB id

1HNZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH HYGROMYCIN B

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAUGG*CUGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1HNZ_071 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.2994

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

1HNZ|1|A|C|1412
1HNZ|1|A|A|1413
1HNZ|1|A|U|1414
1HNZ|1|A|G|1415
1HNZ|1|A|G|1416
*
1HNZ|1|A|C|1484
1HNZ|1|A|U|1485
1HNZ|1|A|G|1486
1HNZ|1|A|G|1487
1HNZ|1|A|G|1488

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain L

30S RIBOSOMAL PROTEIN S12