Motif IL_71154.3 Version IL_71154.3 of this group appears in releases 4.2 to 4.2

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8		9		10	1-10	2-8	2-9	3-7	3-8	4-7	5-6
1	IL_5BTM_001	5BTM	0.2028	0	Triple non-canonical cWW pairs	A	RNA (55-mer)	U	10	U	11	C	12	U	13	A	14	*	U	42	U	43	C	44	U	45	A	46	cWW	ncWW	cwW		ncWw	cwW	cWW
2	IL_8SP9_002	8SP9	0.2014	0	Triple non-canonical cWW pairs	C	Enterovirus 5' cloverleaf cis-acting replication element	C	99	U	100	U	101	U	102	G	103	*	C	82	U	83	C	84	U	85	G	86	cWW		ncwW		ncWW	cWw	cWW
3	IL_8DP3_002	8DP3	0.1850	0	Triple non-canonical cWW pairs	R	Enterovirus 5' cloverleaf cis-acting replication element	C	54	U	55	C	56	U	57	G	58	*	C	71	U	72	U	73	U	74	G	75	cWW		cwW	ncWW	cWW	cWw	cWW
4	IL_8VM9_004	8VM9	0.1721	0	Triple non-canonical cWW pairs	R	Enterovirus 5' cloverleaf cis-acting replication element	C	48	U	49	C	50	U	51	G	52	*	C	68	U	69	U	70	U	71	G	72	cWW		cwW	ncWW	cWW	cWw	cWW
5	IL_8VM8_003	8VM8	0.2029	0	Triple non-canonical cWW pairs	R	Enterovirus 5' cloverleaf cis-acting replication element	C	54	U	55	C	56	U	57	G	58	*	C	74	U	75	U	76	U	77	G	78	cWW		cwW		cWW	cWw	cWW
6	IL_9D9P_003	9D9P	0.1514	0		R	Enterovirus 5' cloverleaf cis-acting replication element	C	54	U	55	C	56	U	57	G	58	*	C	71	U	72	U	73	U	74	G	75	cWW		cwW	ncWW	cWW	cWw	cWW
7	IL_8VMA_004	8VMA	0.1473	0	Triple non-canonical cWW pairs	C	Enterovirus 5' cloverleaf cis-acting replication element	C	51	U	52	C	53	C	54	U	55	*	A	71	C	72	U	73	U	74	G	75	cWW		cwW		ncWW	ncWw	cWW
8	IL_8VMB_003	8VMB	0.1325	0	Triple non-canonical cWW pairs	R	Enterovirus 5' cloverleaf cis-acting replication element	C	51	U	52	C	53	C	54	U	55	*	A	68	C	69	U	70	U	71	G	72	cWW		cwW		cWW	ncwW	cWW
9	IL_9D9O_002	9D9O	0.0000	0		R	Enterovirus 5' cloverleaf cis-acting replication element	C	54	U	55	C	56	U	57	G	58	*	C	71	U	72	U	73	U	74	G	75	cWW		cwW		ncWW	cWw	cWW
10	IL_8S95_002	8S95	0.1595	0	Triple non-canonical cWW pairs	C	Enterovirus 5' cloverleaf cis-acting replication element	C	101	C	102	U	103	U	104	G	105	*	C	84	U	85	C	86	C	87	G	88	cWW		ncwW		cWW	ncWw	cWW
11	IL_7VYX_008	7VYX	0.3640	0	Partly complementary	C	sgRNA	G	11	A	12	C	13	U	14	U	15	*	G	51	U	52	G	53	C	54	C	55	cWW		ncWWa		ncWW	ncWw	ncWWa
12	IL_7VYX_004	7VYX	0.4364	0	Partly complementary	C	sgRNA	U	37	U	38	A	39	U	40	C	41	*	G	21	G	22	A	23	U	24	G	25	ncWW		ncwW		ncwW	ncWWa	cWW
13	IL_8P9A_349	8P9A	0.4869	0		AR	LSU rRNA	C	3162	A	3163	C	3164	A	3165	C	3166	*	G	3284	C	3285	G	3286	U	3287	G	3288	cWW				ncWW	ncWWa	cWW
14	IL_9JA9_001	9JA9	0.4464	0		A	Theophylline aptamer	G	4	A	5	U	6	A	7	C	8	*	G	26	C	27	A	28	G	29	C	30	cWW		cWW		ntSH	cWW	cWW
15	IL_8D29_010	8D29	0.5097	0	Partly complementary	C	RNA (34-MER)	G	4	A	5	U	6	A	7	C	8	*	G	27	C	28	A	29	G	30	C	31	cWW		cWW		ncWW	ncWW	cWW
16	IL_8B0X_176	8B0X	0.6049	0	Triple non-canonical cWW pairs (H)	A	SSU rRNA	G	713	G	714	A	715	A	716	U	717	*	A	673	G	674	A	675	A	676	U	677	cWWa		cWW		ncwW	cWW	cWW
17	IL_4LFB_065	4LFB	0.5966	0	Triple non-canonical cWW pairs	A	SSU rRNA	G	713	G	714	A	715	A	716	C	717	*	G	673	G	674	A	675	A	676	U	677	ncWWa		cWW		ncwW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUCUG*CUUUG	5
CUCCU*ACUUG	2
GAUAC*GCAGC	2
UUCUA*UUCUA	1
CUUUG*CUCUG	1
CCUUG*CUCCG	1
GACUU*GUGCC	1
UUAUC*GGAUG	1
CACAC*GCGUG	1
GGAAU*AGAAU	1
GGAAC*GGAAU	1

Non-Watson-Crick part of the motif

Sequence	Counts
UCU*UUU	5
UCC*CUU	2
AUA*CAG	2
GAA*GAA	2
UCU*UCU	1
UUU*UCU	1
CUU*UCC	1
ACU*UGC	1
UAU*GAU	1
ACA*CGU	1

Release history

Release	4.2
Date	2025-10-08
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Triple non-canonical cWW pairs (9)
(4)
Partly complementary (3)
Triple non-canonical cWW pairs (H) (1)
Basepair signature: cWW-cWW-cWW-cWW-cWW
Heat map statistics: Min 0.06 | Avg 0.36 | Max 0.64

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Coloring options: Nucleotide numbers

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