IL_1HR0_047

3D structure

PDB id

1HR0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF INITIATION FACTOR IF1 BOUND TO THE 30S RIBOSOMAL SUBUNIT

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1HR0_047 not in the Motif Atlas

Geometric match to IL_4LFB_049

Geometric discrepancy: 0.28

The information below is about IL_4LFB_049

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

1HR0|1|A|C|1128
1HR0|1|A|C|1129
1HR0|1|A|A|1130
1HR0|1|A|G|1131
1HR0|1|A|C|1132
*
1HR0|1|A|G|1142
1HR0|1|A|G|1143

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain I

30S RIBOSOMAL PROTEIN S9

Chain J

30S RIBOSOMAL PROTEIN S10