IL_1I94_020

3D structure

PDB id

1I94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURES OF THE SMALL RIBOSOMAL SUBUNIT WITH TETRACYCLINE, EDEINE AND IF3

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1I94_020 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.2004

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1I94|1|A|G|444
1I94|1|A|A|445
1I94|1|A|A|446
1I94|1|A|A|447
1I94|1|A|C|448
1I94|1|A|C|449
*
1I94|1|A|G|461
1I94|1|A|A|462
1I94|1|A|C|463
1I94|1|A|U|464
1I94|1|A|G|465
1I94|1|A|A|466
1I94|1|A|C|467

Current chains

Chain A

16S RRNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16