IL_1I94_052

3D structure

PDB id

1I94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURES OF THE SMALL RIBOSOMAL SUBUNIT WITH TETRACYCLINE, EDEINE AND IF3

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

1I94|1|A|U|1238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1I94_052 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.2104

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

1I94|1|A|G|1236
1I94|1|A|A|1237
1I94|1|A|U|1238
1I94|1|A|G|1239
*
1I94|1|A|C|1258
1I94|1|A|U|1259
1I94|1|A|A|1260
1I94|1|A|A|1261
1I94|1|A|U|1262
1I94|1|A|C|1263

Current chains

Chain A

16S RRNA

Nearby chains

Chain C

30S RIBOSOMAL PROTEIN S3

Chain J

30S RIBOSOMAL PROTEIN S10